Downloads articles and presentations on the cancer, 2022

Supplemental table for cell line data

A complete list of all 1,250 cell lines available in the platform

Table of JetSet best probe sets

JetSet best probe sets

Teaching materials

ROC analysis applied methods


Related publications

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Kovacs SA, Fekete JT, Gyorffy B: Predictive biomarkers of immunotherapy response with pharmacological applications in solid tumors, 
Acta Pharmacol Sin., 2023 Sep;44(9):1879-1889. doi: 10.1038/s41401-023-01079-6.

Janos Fekete, Balazs Gyorffy: New transcriptomic biomarkers of 5-fluorourail resistance, Int J Mol Sci., 2023 Jan 12;24(2):1508, 
doi: 10.3390/ijms24021508.

Janos Fekete, Balazs Gyorffy: A unified platform enabling biomarker ranking and validation for 1562 drugs using transcriptomic 
data of 1250 cancer cell lines, Computational and Structural Biotechnology Journal, 2022, 20:2885-2894, 
doi: 10.1016/j.csbj.2022.06.007.

Fekete J.T., Ősz Á., Pete I., Nagy G.R., Vereczkey I. and Győrffy B. Predictive biomarkers of platinum and taxane
resistance using the transcriptomic data of 1816 ovarian cancer patients. Gynecol Oncol, 2020 Jan 20.  

Menyhárt O, Fekete, J. T. and Gyorffy B. Gene expression indicates altered immune modulation and signaling pathway 
activation in ovarian cancer patients resistant to topotecan. Int J Mol Sci, 2019 Jun 5;20(11). pii:E2750. 

Fekete, J. T. and B. Gyorffy . Validating predictive biomarkers of chemotherapy/hormonal therapy/anti-HER2 therapy
using transcriptomic data of 3,104 breast cancer patients. Int J Cancer, 2019 Apr 24. doi:10.1002/ijc.32369 

Menyhárt O, Harami-Papp H, Sukumar S, Schäfer R, Magnani L, de Barrios O, Győrffy B. Guidelines for the selection of functional
assays to evaluate the hallmarks of cancer. Biochim Biophys Acta. 2016 Dec;1866(2):300-319. doi: 10.1016/j.bbcan.2016.10.002. 

Győrffy B, Hatzis C, Sanft T, Hofstatter E, Aktas B, Pusztai L. Multigene prognostic tests in breast cancer: past, present, future. 
Breast Cancer Res. 2015 Jan 27;17:11. doi: 10.1186/s13058-015-0514-2.

Li Q, Birkbak NJ, Gyorffy B, Szallasi Z, Eklund AC. Jetset: selecting the
optimal microarray probe set to represent a gene. BMC Bioinformatics. 2011 Dec 15;12:474. doi: 10.1186/1471-2105-12-474.